PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012573662.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 353aa    MW: 40045 Da    PI: 7.004
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012573662.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13177224355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r h ++Er+RR+++ ++f  L +++P +     kK++Ka+iLe A+ Y+k+L+
  XP_012573662.1 177 RDHVMAERKRREKLSQKFIVLSSMIPGL-----KKMDKATILEDAISYLKQLK 224
                     5699************************.....9*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.929174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-11178223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-17178234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16179235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-13179227No hitNo description
SMARTSM003532.9E-15180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MIQISSTNYQ PELFGMEDPT FFDDQEYTMD SFAFHFDDID FKPFSASPES FSSHNSNHKR  60
FNSESPNLSV ASVQPTKQLK TTWNNTYGSD SMNKNIIPKA SNSSPSSKII SFDFDHSNTS  120
SVSSQQFYNM VKKPKTEIAY GKNLNFEAVI SQGDYDNKLE NKVSTTTTTQ RNSIQARDHV  180
MAERKRREKL SQKFIVLSSM IPGLKKMDKA TILEDAISYL KQLKERVNTL EEQAAVDRTV  240
ESAVFAKRSI LFADDDHNSS CDENADQSVP KIEARVSGKD MLLRIYCDKH NGRAATAILC  300
ELEKHHLTIQ SSCAFPFGNN YLDITIVAKM NKEYCLTIKD LIRSISQVLR QLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182187ERKRRE
2183188RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012573662.10.0PREDICTED: transcription factor bHLH19
TrEMBLG7JGD51e-142G7JGD5_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGGLYMA05G23291.11e-125(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.14e-53bHLH family protein